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Diffreps
Finding differential chromatin modification sites from ChIP-seq data
Ngsplot
An easy-to-use visualization tool for global enrichment of next-generation sequencing data
Chromatin and Gene Databases:
Published genome-wide datasets—not included within the relevant publications due to journal policy—are provided here:
Sun, Neuroscience, 2017
Supplementary Table 1. Nucleosome occupancy events after repeated cocaine exposure. Nucleosome occupancy events were computed from total H3 ChIP–seq data using DANPOS as described in Methods. The chromosomal locations of these events are shown in the Table as Start to Finish, and were then annotated to the genome accordingly.
Supplementary Table 2. Nucleosome shift events after repeated cocaine exposure. Nucleosome shift events were computed from total H3 ChIP–seq data using DANPOS as described in Methods. The chromosomal locations of these events are shown in the Table as Start to Finish, and were then annotated to the genome accordingly.